One should be the Start Battery, the other should be the House battery. On a simple 2 bank system, I like to dedicate #1 to the Start, and #2 to the House. Start and run on #1, then once you stop the engine, sitch to batt #2. I'd also size Batt. #2 (house) ti be much larger (Group 31 (min.), 2 x Group 31 in parallel, or even a 4D/8D if you can fit it.)
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