Where is your Air Conditioning located? The A/C should have a condensation pan under it. There should be a drain hose in the condensation pan. Many models drained the A/C condensation into the bilge. The amount of water you're describing sounds like more than rubrail, stanchion, hatch, or cleat leak.
I doubt you have any pressure water (e.g. hot/cold) running that far forward. Typically water is only going to come from a few places:
Rain/spray: hatches, stanchion bases, cleats, rubrail leaks
Sea: broken through hull fittings, intake hoses, engine cooling leaks, bellows/transom assembly. (Engine, bellows, transom assembly would all be in the engine bilge).
pressure water (hot/cold) leaks, A/C condensation leaks.
As for the drain....maybe a picture would be helpful. When you snake the locker drain, does it stop dead or can you keep feeding it. You've stated you don't know where it goes. I would not be nearly as concerned with where it goes and whether it is blocked. I assume it is going to go into the bilge itself.
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