Tanks are aluminum, so if there is rust it must be from another source.
You can continue with 'flushing' the way you are if it's minimal, just buy the filters in bulk.
When I found contamination in my tanks, I hired a local firm who was able to pump out the tanks of the bad fuel for around $100 ea.
That didn't include any cleaning, as I just had bad fuel/water.
John
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