Did the PO rewire this? According to the wiring diagram here (
http://www.maxumboatparts.com/manuals/1759994.pdf) it has 1 battery for STB and 1 battery for PORT engine. It does seem odd to have 2 batteries for one engine and house batteries for the other.
If it were me, I would wire 1 battery to each engine and leave the other 4 as house. Having 2 batteries connected together does nothing at all when 1 dies unless they are isolated with a switch. If they are not, voltage will equalize between the 2 and the dead one will kill the good one. 2 are only needed in large motors that need that extra kick that you just can't get with 1 (and a 5.0 is hardly in that class).
Maybe the PO was trying to 2 have 2 batteries for everything. 2 for STB, 2 for PORT and 2 for House? Maybe a rewire gone bad?
And I do agree 100% with Phillbo, use Marine Cranking batteries for the engines and Deep Cycle for the House.